Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8002

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16369 and 16370 are separated by 509 nucleotides mRNA_8001: 16369 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 183,994 to 185,593 16369 mRNA_8002: 16370 - KOG0132 RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains, at 186,103 to 188,392 16370

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
185,395 + 16369 mRNA_8001 0.88 -0.2
185,425 - 16369 mRNA_8001 0.89 +0.1
185,544 + +0.7
185,640 - -0.2
185,687 + -0.0
185,689 - +1.3
185,696 + -0.1
185,754 + -1.1
185,775 - -0.2
185,786 + +1.8
185,845 - +0.1
185,881 - +0.9
185,918 + -1.5
185,926 + +0.2
185,933 + +0.8
185,941 + +1.1
185,953 + +0.3
186,134 - +1.4
186,181 + -0.4
186,284 - -0.7
186,332 - 16370 mRNA_8002 0.10 +0.3
186,396 - 16370 mRNA_8002 0.13 -0.2
186,423 + 16370 mRNA_8002 0.14 -1.5
187,162 + 16370 mRNA_8002 0.46 +2.4
187,294 - 16370 mRNA_8002 0.52 +0.7
187,449 + 16370 mRNA_8002 0.59 -0.5
187,454 - 16370 mRNA_8002 0.59 +0.6
187,467 - 16370 mRNA_8002 0.60 +1.6
189,362 + +1.3

Or see this region's nucleotide sequence