Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8004

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16371 and 16372 are separated by 254 nucleotides16372 and 16373 are separated by 823 nucleotides mRNA_8003: 16371 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 190,114 to 191,045 16371 mRNA_8004: 16372 - K06648 SWI6 regulatory protein SWI6, at 191,300 to 193,753 16372 mRNA_8005: 16373 - BLAST alpha- -mannosyltransferase alg11p [Moniliophthor..., at 194,577 to 195,838 16373

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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190,390 + 16371 mRNA_8003 0.30 +0.8
190,456 - 16371 mRNA_8003 0.37 -0.2
190,480 + 16371 mRNA_8003 0.39 +1.6
190,506 + 16371 mRNA_8003 0.42 +0.1
190,816 + 16371 mRNA_8003 0.75 +0.2
191,091 - +1.3
191,091 + +1.0
191,341 - +0.5
191,839 + 16372 mRNA_8004 0.22 -2.8
193,620 - -0.4
193,818 - -1.8
193,929 - -0.7
193,996 + +2.9
194,080 - +0.7
194,161 + +1.4
194,366 + -0.1
194,476 + +0.6
194,505 + -0.1
194,506 + +0.3
194,631 + -1.6
194,644 - +0.5

Or see this region's nucleotide sequence