Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8052

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16419 and 16420 are separated by 473 nucleotides16420 and 16421 are separated by 112 nucleotides mRNA_8051: 16419 - K02958 RP-S15e, RPS15 small subunit ribosomal protein S15e, at 305,928 to 306,584 16419 mRNA_8052: 16420 - KOG2372 Oxidation resistance protein, at 307,058 to 308,931 16420 mRNA_8053: 16421 - K03037 PSMD6, RPN7 26S proteasome regulatory subunit N7, at 309,044 to 310,701 16421

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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306,699 - +0.4
306,709 - +3.0
306,714 - +0.6
306,752 + +1.2
306,848 - +0.7
306,863 + -0.1
306,866 - +1.6
306,866 - -0.9
306,871 - +0.3
306,875 + +0.5
306,875 + -0.8
307,211 + -1.8
307,316 - 16420 mRNA_8052 0.14 -1.3
307,335 + 16420 mRNA_8052 0.15 +0.3
307,778 + 16420 mRNA_8052 0.38 -1.8
307,988 - 16420 mRNA_8052 0.50 +0.5
307,997 + 16420 mRNA_8052 0.50 -1.1
308,280 + 16420 mRNA_8052 0.65 +1.2
308,357 + 16420 mRNA_8052 0.69 +1.7
308,475 + 16420 mRNA_8052 0.76 +0.7
308,751 - +0.5
308,758 - +0.9
308,764 - +0.2
308,924 + +2.4
308,930 + +0.3

Or see this region's nucleotide sequence