Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8071

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16438 and 16439 are separated by 782 nucleotides16439 and 16440 are separated by 365 nucleotides mRNA_8070: 16438 - KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain, at 352,971 to 356,378 16438 mRNA_8071: 16439 - Hypothetical Protein, at 357,161 to 359,241 16439 mRNA_8072: 16440 - K14684 SLC25A23S solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41, at 359,607 to 361,273 16440

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
356,185 - -2.8
356,224 + -1.9
356,228 + -2.5
356,331 - +2.1
356,336 + -0.9
356,344 + -1.5
356,361 + +1.0
356,372 - +0.0
356,373 - +2.1
356,374 - -1.1
356,389 + +0.8
356,390 + -0.0
356,411 - -0.2
356,431 - +0.9
356,460 + +1.2
356,492 + +1.7
356,492 + -2.4
356,499 + +1.8
356,506 + +0.3
356,533 + +0.1
356,534 - +0.0
356,597 - -0.9
356,608 + +0.6
356,611 - +1.2
356,613 - +0.7
356,614 + +1.5
356,614 + -1.1
356,614 - +0.4
356,618 + -1.0
356,620 + -0.3
356,626 + +0.5
356,626 + +0.0
356,628 - +1.7
356,630 - -0.4
356,633 - +0.7
356,636 + +0.2
356,639 - +0.6
356,658 - -1.1
356,764 - +0.7
356,852 - +0.1
356,866 - -0.1
356,886 - +0.5
356,909 + -0.1
356,916 + +0.8
356,918 - -1.1
356,934 + -0.6
356,934 - +0.7
356,935 + -0.3
356,936 - +0.8
356,949 - -0.6
356,950 - -0.1
356,967 - +0.9
356,997 + -0.2
357,026 + +1.6
357,077 + -4.0
357,128 - -0.4
357,223 + -0.1
357,808 + 16439 mRNA_8071 0.31 -0.1
357,951 + 16439 mRNA_8071 0.38 -2.9
358,118 + 16439 mRNA_8071 0.46 +0.1
358,528 + 16439 mRNA_8071 0.66 +0.2
358,538 - 16439 mRNA_8071 0.66 +2.7
358,676 - 16439 mRNA_8071 0.73 -0.2
358,979 - 16439 mRNA_8071 0.87 -0.5
358,991 + 16439 mRNA_8071 0.88 +0.7
359,119 - +0.8
359,134 + -1.2
359,162 + +0.1
359,279 + +1.3
359,286 - +0.3
359,300 - -0.5
359,420 + +2.3
359,431 - +0.6
359,431 + -1.6
359,447 - +1.5
359,698 - +1.3
359,744 + +1.3
359,748 - +3.1
360,047 - 16440 mRNA_8072 0.26 -0.7
360,146 - 16440 mRNA_8072 0.32 +1.0
360,172 - 16440 mRNA_8072 0.34 +1.2

Or see this region's nucleotide sequence