Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8125

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16492 and 16493 are separated by 709 nucleotides16493 and 16494 are separated by 97 nucleotides mRNA_8124: 16492 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 474,474 to 477,508 16492 mRNA_8125: 16493 - Hypothetical Protein, at 478,218 to 479,543 16493 mRNA_8126: 16494 - BLAST putative 15-O-acetyltransferase Tri3 [Moniliophthora ..., at 479,641 to 482,114 16494

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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477,389 + -2.1
477,393 - +0.9
477,418 + +0.7
477,726 + +0.2
477,728 + -0.2
477,740 - -1.5
477,743 + +1.2
477,743 + +1.0
477,743 + +0.1
477,880 + -0.9
477,889 - +0.7
477,994 - +1.1
478,074 + +2.3
478,308 - -0.5
478,442 - 16493 mRNA_8125 0.17 +0.1
478,774 - 16493 mRNA_8125 0.42 +0.1
479,196 + 16493 mRNA_8125 0.74 -0.1
479,202 + 16493 mRNA_8125 0.74 -0.0
479,510 + +1.9
479,714 - -0.6
480,244 + 16494 mRNA_8126 0.24 +0.6

Or see this region's nucleotide sequence