Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8144

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16511 and 16512 are separated by 146 nucleotides16512 and 16513 are separated by 134 nucleotides mRNA_8143: 16511 - K01515 nudF ADP-ribose pyrophosphatase, at 514,530 to 515,609 16511 mRNA_8144: 16512 - HMMPfam-Domain of unknown function (DUF3506)-PF12014,HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 515,756 to 518,130 16512 mRNA_8145: 16513 - K15304 RANBP3 Ran-binding protein 3, at 518,265 to 522,947 16513

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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515,428 + 16511 mRNA_8143 0.83 +0.1
515,524 + -0.7
515,565 + -0.7
515,682 - +2.2
515,750 - -0.4
515,847 - +3.2
515,848 - +0.1
515,985 - +1.1
516,007 + 16512 mRNA_8144 0.11 +0.3
516,109 + 16512 mRNA_8144 0.15 -0.4
516,141 + 16512 mRNA_8144 0.16 +1.5
516,150 + 16512 mRNA_8144 0.17 -1.9
516,300 - 16512 mRNA_8144 0.23 +3.0
516,302 + 16512 mRNA_8144 0.23 +0.8
516,336 + 16512 mRNA_8144 0.24 +2.0
516,731 - 16512 mRNA_8144 0.41 -1.0
516,741 + 16512 mRNA_8144 0.41 -0.6
516,849 - 16512 mRNA_8144 0.46 +1.6
516,867 - 16512 mRNA_8144 0.47 -1.5
516,971 + 16512 mRNA_8144 0.51 +0.8
517,097 + 16512 mRNA_8144 0.56 +0.9
517,598 + 16512 mRNA_8144 0.78 -0.2
517,725 - 16512 mRNA_8144 0.83 +0.3
517,895 + -0.1
517,898 - -1.0
517,916 - +1.0
518,049 + +1.4
518,155 + +1.3
518,196 - +0.2

Or see this region's nucleotide sequence