Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8192

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16559 and 16560 are separated by 258 nucleotides16560 and 16561 are separated by 202 nucleotides mRNA_8191: 16559 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 634,694 to 637,536 16559 mRNA_8192: 16560 - K12780 REC8 meiotic recombination protein REC8, fungi type, at 637,795 to 641,120 16560 mRNA_8193: 16561 - Hypothetical Protein, at 641,323 to 644,118 16561

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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636,850 - 16559 mRNA_8191 0.76 -1.0
637,324 + +1.0
637,456 - +1.5
638,599 + 16560 mRNA_8192 0.24 -0.1
638,748 - 16560 mRNA_8192 0.29 +1.0
639,055 - 16560 mRNA_8192 0.38 +2.1
639,181 - 16560 mRNA_8192 0.42 +2.3
639,195 + 16560 mRNA_8192 0.42 +0.0
639,893 - 16560 mRNA_8192 0.63 +0.4
640,080 + 16560 mRNA_8192 0.69 -1.3
640,082 + 16560 mRNA_8192 0.69 -1.4
640,256 - 16560 mRNA_8192 0.74 -0.3
640,370 + 16560 mRNA_8192 0.77 +0.6
640,388 - 16560 mRNA_8192 0.78 +0.3
640,553 - 16560 mRNA_8192 0.83 +0.2
640,860 - +0.3
641,129 - -0.6
641,436 + +0.2
641,584 + -0.3

Or see this region's nucleotide sequence