Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8200

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16567 and 16568 are separated by 466 nucleotides16568 and 16569 are separated by 151 nucleotides mRNA_8199: 16567 - Hypothetical Protein, at 655,877 to 657,716 16567 mRNA_8200: 16568 - KOG4635 Vacuolar import and degradation protein, at 658,183 to 660,127 16568 mRNA_8201: 16569 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 660,279 to 661,499 16569

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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657,834 - +0.5
658,001 + +1.6
658,129 - -0.6
658,718 - 16568 mRNA_8200 0.28 +1.0
658,749 - 16568 mRNA_8200 0.29 +0.2
659,034 - 16568 mRNA_8200 0.44 +1.8
659,052 - 16568 mRNA_8200 0.45 -0.5
659,148 - 16568 mRNA_8200 0.50 -0.1
659,177 - 16568 mRNA_8200 0.51 +2.1
659,318 - 16568 mRNA_8200 0.58 +0.7
659,617 - 16568 mRNA_8200 0.74 +0.1
659,912 + 16568 mRNA_8200 0.89 +0.1
660,317 + -1.5
660,327 - +1.9
660,470 - 16569 mRNA_8201 0.16 +0.5
660,478 - 16569 mRNA_8201 0.16 -0.9
660,493 - 16569 mRNA_8201 0.18 +1.3
660,494 - 16569 mRNA_8201 0.18 -1.8
660,498 + 16569 mRNA_8201 0.18 +1.9
660,501 - 16569 mRNA_8201 0.18 +0.2
660,638 + 16569 mRNA_8201 0.29 +0.2
660,641 - 16569 mRNA_8201 0.30 -0.1
660,682 + 16569 mRNA_8201 0.33 -0.7
660,787 + 16569 mRNA_8201 0.42 -0.2
660,803 - 16569 mRNA_8201 0.43 +0.6
660,809 - 16569 mRNA_8201 0.43 -1.5

Or see this region's nucleotide sequence