Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8208

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16575 and 16576 are separated by 184 nucleotides16576 and 16577 are separated by 245 nucleotides mRNA_8207: 16575 - K09578 PIN1 peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, at 672,113 to 672,814 16575 mRNA_8208: 16576 - BLAST putative Rho guanyl-nucleotide exchange factor [Rhodo..., at 672,999 to 674,159 16576 mRNA_8209: 16577 - K17618 UBLCP1 ubiquitin-like domain-containing CTD phosphatase 1, at 674,405 to 676,070 16577

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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672,042 + +1.0
672,056 - -0.5
672,202 - 16575 mRNA_8207 0.13 +2.4
672,216 + 16575 mRNA_8207 0.15 -0.2
672,322 + 16575 mRNA_8207 0.30 +0.3
672,341 - 16575 mRNA_8207 0.32 -1.5
672,374 + 16575 mRNA_8207 0.37 +0.3
672,682 + 16575 mRNA_8207 0.81 +2.0
673,650 - 16576 mRNA_8208 0.56 -0.6
673,796 + 16576 mRNA_8208 0.69 +1.3
674,701 + 16577 mRNA_8209 0.18 +1.7
674,843 - 16577 mRNA_8209 0.26 +0.2

Or see this region's nucleotide sequence