Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8229

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16596 and 16597 are separated by 567 nucleotides16597 and 16598 are separated by 916 nucleotides mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716,200 to 719,512 16596 mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720,080 to 721,710 16597 mRNA_8230: 16598 - K09668 LARGE glycosyltransferase-like protein LARGE, at 722,627 to 724,673 16598

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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719,217 - +0.7
719,536 - +0.2
719,644 - +1.2
719,645 - -2.0
719,647 - -0.0
719,647 - -0.7
719,669 + -0.1
719,800 + -1.7
719,939 + +2.0
719,939 + +0.1
720,213 - -0.3
720,218 - +0.1
720,236 - +0.6
720,522 - 16597 mRNA_8229 0.27 -0.6
720,539 + 16597 mRNA_8229 0.28 +2.2
720,655 + 16597 mRNA_8229 0.35 +0.3
720,741 + 16597 mRNA_8229 0.41 +1.7
720,955 + 16597 mRNA_8229 0.54 +0.5
720,998 + 16597 mRNA_8229 0.56 -0.6
721,074 - 16597 mRNA_8229 0.61 +1.8
721,350 + 16597 mRNA_8229 0.78 +0.8
721,353 - 16597 mRNA_8229 0.78 +0.0
721,485 + 16597 mRNA_8229 0.86 +0.1
721,755 - -0.1
721,764 + +1.3
721,789 + -0.1
721,790 - +0.3
721,798 + -0.4
721,798 + +0.3
721,800 + +1.2
721,803 - +1.8
721,810 - -0.1
721,817 + +0.5
721,886 + +2.8
721,890 - -1.4
721,942 - +0.9
721,949 + -0.1
721,955 - -0.8
721,960 - +0.3
721,967 + +1.4
721,977 + +0.0
722,068 - +0.5
722,076 + -0.1
722,078 + -0.0
722,079 + -2.7
722,079 + -0.4
722,092 - +0.4
722,098 - +0.1
722,099 + +0.2
722,099 - +0.9
722,107 - +0.1
722,109 - +0.6
722,115 - +0.1
722,116 + -1.8
722,116 + +0.0
722,154 - +2.7
722,156 + +0.1
722,156 - +1.7
722,157 + -0.6
722,173 - +0.5
722,178 + +0.2
722,179 + -0.2
722,183 + -1.2
722,184 + +0.8
722,184 + -0.2
722,187 - -1.2
722,189 + +0.3
722,194 - +0.4
722,197 + -0.1
722,198 + +1.6
722,201 + +2.6
722,204 - +0.2
722,212 - -0.1
722,222 - -1.4
722,225 - -0.9
722,238 + +1.9
722,265 + -0.5
722,270 - -0.8
722,278 - +0.0
722,285 + -0.5
722,290 + +1.3
722,310 - +2.3
722,346 + +3.7
722,384 - +0.7
722,397 + +0.7
722,411 - -0.7
722,412 + +0.8
722,420 - -1.5
722,421 + -0.8
722,431 + -0.2
722,432 + -0.3
722,434 - +0.4

Or see this region's nucleotide sequence