Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8244

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16611 and 16612 are separated by 167 nucleotides16612 and 16613 are separated by 293 nucleotides mRNA_8243: 16611 - K08739 MLH3 DNA mismatch repair protein MLH3, at 748,481 to 751,637 16611 mRNA_8244: 16612 - K14786 KRI1 protein KRI1, at 751,805 to 754,209 16612 mRNA_8245: 16613 - HMMPfam-Mitochondrial carrier protein-PF00153,ProSiteProfiles-Solute carrier (Solcar) repeat profile.-PS50920,SUPERFAMILY--SSF103506, at 754,503 to 755,818 16613

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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751,145 + 16611 mRNA_8243 0.84 -0.2
751,148 + 16611 mRNA_8243 0.84 +1.1
751,152 + 16611 mRNA_8243 0.85 -0.4
751,248 - 16611 mRNA_8243 0.88 -0.3
751,425 - -0.7
751,550 - -1.4
751,574 + +0.4
751,685 - -0.0
751,697 - -0.3
754,333 + -2.2
754,377 - +2.1
754,466 - -0.6
754,511 - -0.3
754,789 - 16613 mRNA_8245 0.22 -0.4
754,944 + 16613 mRNA_8245 0.34 +0.9
755,186 + 16613 mRNA_8245 0.52 +0.2

Or see this region's nucleotide sequence