Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8253

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16620 and 16621 are separated by 705 nucleotides16621 and 16622 are separated by 383 nucleotides mRNA_8252: 16620 - HMMPfam-Domain of unknown function (DUF4451)-PF14616, at 770,970 to 773,846 16620 mRNA_8253: 16621 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 774,552 to 775,844 16621 mRNA_8254: 16622 - HMMPfam-Stc1 domain-PF12898, at 776,228 to 777,333 16622

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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774,033 + +1.1
774,607 - +2.3
775,340 + 16621 mRNA_8253 0.61 +0.5
775,470 - 16621 mRNA_8253 0.71 +0.1
775,474 + 16621 mRNA_8253 0.71 +0.3
775,606 + 16621 mRNA_8253 0.82 +0.9
775,906 - -1.0
775,923 + +0.6
775,938 + -1.1
776,030 + -0.0
776,087 - -1.2
776,092 + -1.6
776,226 + +0.3
776,625 - 16622 mRNA_8254 0.36 +0.2
776,801 + 16622 mRNA_8254 0.52 +1.2

Or see this region's nucleotide sequence