Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8268

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16635 and 16636 are separated by 359 nucleotides16636 and 16637 are separated by 63 nucleotides mRNA_8267: 16635 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 806,792 to 809,289 16635 mRNA_8268: 16636 - K11511 APITD1, CENPS, MHF1 centromere protein S, at 809,649 to 810,847 16636 mRNA_8269: 16637 - Hypothetical Protein, at 810,911 to 812,187 16637

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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809,285 - +1.8
809,286 - +2.1
809,290 - +1.9
809,302 - +0.3
809,342 + -1.3
809,427 - +1.1
809,430 - -1.0
809,474 + +1.8
809,476 - +2.4
810,061 - 16636 mRNA_8268 0.34 -0.1
810,200 - 16636 mRNA_8268 0.46 -0.1
810,215 - 16636 mRNA_8268 0.47 -0.1
810,322 - 16636 mRNA_8268 0.56 -0.3
810,338 + 16636 mRNA_8268 0.57 +1.3
810,627 - 16636 mRNA_8268 0.82 +0.0
810,645 - 16636 mRNA_8268 0.83 +1.3
810,650 - 16636 mRNA_8268 0.83 +0.2
810,918 + +0.1
811,113 + 16637 mRNA_8269 0.16 +2.8

Or see this region's nucleotide sequence