Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8270

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16637 and 16638 are separated by 281 nucleotides16638 and 16639 are separated by 390 nucleotides mRNA_8269: 16637 - Hypothetical Protein, at 810,911 to 812,187 16637 mRNA_8270: 16638 - Hypothetical Protein, at 812,469 to 813,656 16638 mRNA_8271: 16639 - K14397 NUDT21, CPSF5, CFIM25 cleavage and polyadenylation specificity factor subunit 5, at 814,047 to 815,109 16639

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
811,968 + 16637 mRNA_8269 0.83 +0.8
812,115 + +0.2
812,277 + +2.2
812,716 + 16638 mRNA_8270 0.21 +1.7
812,826 - 16638 mRNA_8270 0.30 +0.8
813,155 + 16638 mRNA_8270 0.58 +1.3
813,173 + 16638 mRNA_8270 0.59 +0.9
813,226 + 16638 mRNA_8270 0.64 +3.0
813,282 + 16638 mRNA_8270 0.68 +0.4
813,592 + -0.8
813,682 + +0.3
813,728 + +0.1
813,866 - +0.4
813,874 + +1.1
813,874 + +0.4
814,025 - -0.4
814,032 - -3.4
814,038 + +1.6
814,050 - -0.2
814,144 - -0.8
814,156 - 16639 mRNA_8271 0.10 -1.1
814,289 - 16639 mRNA_8271 0.23 -1.1
814,311 - 16639 mRNA_8271 0.25 -1.0
814,316 + 16639 mRNA_8271 0.25 -0.1
814,317 - 16639 mRNA_8271 0.25 +0.1
814,318 - 16639 mRNA_8271 0.25 -0.2
814,609 - 16639 mRNA_8271 0.53 -0.7
814,625 - 16639 mRNA_8271 0.54 +2.0
814,631 + 16639 mRNA_8271 0.55 -0.1
814,636 + 16639 mRNA_8271 0.55 +1.5

Or see this region's nucleotide sequence