Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8279

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16646 and 16647 are separated by 818 nucleotides16647 and 16648 are separated by 296 nucleotides mRNA_8278: 16646 - K16330 K16330 pseudouridylate synthase / pseudouridine kinase, at 825,362 to 828,181 16646 mRNA_8279: 16647 - BLAST Type-1 angiotensin II receptor-associated protein [Ch..., at 829,000 to 829,923 16647 mRNA_8280: 16648 - KOG2157 Predicted tubulin-tyrosine ligase, at 830,220 to 831,668 16648

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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828,247 - +0.2
828,405 + -0.8
828,668 + +0.2
828,801 - -0.4
828,812 + +0.4
828,820 - +3.2
828,839 + +1.5
828,843 + -1.4
828,845 + +0.2
828,848 - -1.2
828,983 - -0.3
828,984 + -1.0
828,986 - -1.8
828,994 - +1.6
828,999 + -0.2
829,001 + +0.7
829,005 - -0.2
829,695 - 16647 mRNA_8279 0.75 +2.2
829,699 + 16647 mRNA_8279 0.76 -1.8
829,699 + 16647 mRNA_8279 0.76 -1.7
829,717 + 16647 mRNA_8279 0.78 +0.4
829,992 + +0.8
829,999 - -0.2
830,012 + +0.1
830,135 - +0.2
830,283 + -1.6
830,307 + +0.1
830,456 + 16648 mRNA_8280 0.16 +2.9

Or see this region's nucleotide sequence