Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8300

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16667 and 16668 are separated by 52 nucleotides16668 and 16669 are separated by 144 nucleotides mRNA_8299: 16667 - Hypothetical Protein, at 879,552 to 881,168 16667 mRNA_8300: 16668 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13640,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SMART-Prolyl 4-hydroxylase alpha subunit homologues.-SM00702, at 881,221 to 882,082 16668 mRNA_8301: 16669 - K20361 USO1 intracellular protein transport protein USO1, at 882,227 to 887,090 16669

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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880,329 + 16667 mRNA_8299 0.48 +0.3
880,497 + 16667 mRNA_8299 0.58 -0.7
880,642 - 16667 mRNA_8299 0.67 +0.9
880,825 + 16667 mRNA_8299 0.79 +0.3
881,068 - -0.5
881,076 - -0.2
881,116 - -0.8
881,209 + -1.1
881,220 + +2.0
881,254 + -0.1
881,353 + 16668 mRNA_8300 0.15 +0.0
881,357 + 16668 mRNA_8300 0.16 +0.0
881,498 + 16668 mRNA_8300 0.32 +0.2
881,520 - 16668 mRNA_8300 0.35 +0.4
881,645 - 16668 mRNA_8300 0.49 +0.5
881,654 + 16668 mRNA_8300 0.50 +1.0
881,656 - 16668 mRNA_8300 0.50 +2.1
881,668 + 16668 mRNA_8300 0.52 +0.3
881,692 - 16668 mRNA_8300 0.55 +2.5
881,958 - 16668 mRNA_8300 0.85 +0.4
882,108 - +0.7
882,136 - +0.3

Or see this region's nucleotide sequence