Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8304

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16671 and 16672 are separated by 544 nucleotides16672 and 16673 are separated by 491 nucleotides mRNA_8303: 16671 - KOG1398 Uncharacterized conserved protein, at 890,417 to 892,180 16671 mRNA_8304: 16672 - K01336 E3.4.21.48 cerevisin, at 892,725 to 894,788 16672 mRNA_8305: 16673 - Hypothetical Protein, at 895,280 to 896,635 16673

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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891,771 - 16671 mRNA_8303 0.77 -0.2
891,916 - 16671 mRNA_8303 0.85 +1.8
891,933 + 16671 mRNA_8303 0.86 +0.1
892,209 + +0.3
892,217 + +0.7
892,237 + -0.7
892,339 - +0.9
892,373 - +1.6
892,374 + -0.8
892,384 - -0.3
892,393 - +0.4
892,394 - +2.1
892,395 - -0.2
892,404 - +1.0
892,410 + -0.4
892,499 - +1.5
892,506 + -0.6
892,532 + +0.9
892,556 - +0.2
892,660 - +0.8
892,660 - +0.9
892,661 + +0.9
892,669 - +1.0
892,669 + -0.2
892,671 - +0.9
892,678 - +0.4
892,689 - -0.3
892,802 - -0.2
892,814 + -0.1
892,816 + -0.1
892,826 - +0.1
892,831 - +1.9
892,831 - -0.1
892,864 + +1.3
892,865 + -1.8
892,872 - +0.2
892,954 + 16672 mRNA_8304 0.11 -0.5
892,968 - 16672 mRNA_8304 0.12 -0.1
892,996 + 16672 mRNA_8304 0.13 +0.6
892,997 + 16672 mRNA_8304 0.13 +0.2
892,999 + 16672 mRNA_8304 0.13 +0.0
893,033 + 16672 mRNA_8304 0.15 +0.5
893,123 - 16672 mRNA_8304 0.19 -1.3
893,125 - 16672 mRNA_8304 0.19 -1.5
893,128 + 16672 mRNA_8304 0.20 -0.6
893,133 - 16672 mRNA_8304 0.20 -1.2
893,139 + 16672 mRNA_8304 0.20 +0.9
893,256 - 16672 mRNA_8304 0.26 -1.3
893,271 + 16672 mRNA_8304 0.26 -0.2
893,272 - 16672 mRNA_8304 0.27 -0.8
893,284 + 16672 mRNA_8304 0.27 +0.5
893,290 + 16672 mRNA_8304 0.27 +0.6
893,302 - 16672 mRNA_8304 0.28 +2.3
893,306 + 16672 mRNA_8304 0.28 +0.0
893,306 - 16672 mRNA_8304 0.28 +0.2
893,306 - 16672 mRNA_8304 0.28 +0.4
893,309 + 16672 mRNA_8304 0.28 +0.3
893,317 + 16672 mRNA_8304 0.29 +0.6
893,333 + 16672 mRNA_8304 0.29 -1.1
893,333 + 16672 mRNA_8304 0.29 +1.2
893,442 - 16672 mRNA_8304 0.35 +1.1
893,464 + 16672 mRNA_8304 0.36 -0.2
893,467 - 16672 mRNA_8304 0.36 -0.5
893,476 + 16672 mRNA_8304 0.36 +0.5
893,863 + 16672 mRNA_8304 0.55 +1.1
893,910 + 16672 mRNA_8304 0.57 +0.7
894,050 + 16672 mRNA_8304 0.64 +3.0
894,073 - 16672 mRNA_8304 0.65 +1.4
894,311 - 16672 mRNA_8304 0.77 +2.3
894,761 + +0.1

Or see this region's nucleotide sequence