Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8312

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16679 and 16680 are separated by 59 nucleotides16680 and 16681 are separated by 222 nucleotides mRNA_8311: 16679 - K03016 RPB8, POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3, at 906,669 to 907,618 16679 mRNA_8312: 16680 - K17868 DPH7, RRT2 diphthine methyl ester acylhydrolase, at 907,678 to 909,336 16680 mRNA_8313: 16681 - K11541 URA2 carbamoyl-phosphate synthase / aspartate carbamoyltransferase, at 909,559 to 916,766 16681

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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906,708 - -0.5
906,726 + -2.2
907,770 - +0.3
908,057 - 16680 mRNA_8312 0.23 +0.6
908,199 - 16680 mRNA_8312 0.31 +0.4
908,945 + 16680 mRNA_8312 0.76 +0.8
909,264 + +1.1
909,269 - +0.4
909,297 - -0.7
909,329 + +0.2

Or see this region's nucleotide sequence