Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8326

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16693 and 16694 are separated by 810 nucleotides16694 and 16695 are separated by 578 nucleotides mRNA_8325: 16693 - KOG1688 Golgi proteins involved in ER retention (RER), at 945,635 to 946,237 16693 mRNA_8326: 16694 - Hypothetical Protein, at 947,048 to 947,790 16694 mRNA_8327: 16695 - K10251 HSD17B12, KAR, IFA38 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase, at 948,369 to 949,936 16695

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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946,287 + -0.1
946,289 - +1.8
946,548 - +1.5
946,565 - -0.9
946,565 + +0.3
946,821 - -0.0
946,872 + +0.3
947,553 - 16694 mRNA_8326 0.68 -0.9
947,585 - 16694 mRNA_8326 0.72 +0.2
947,588 + 16694 mRNA_8326 0.73 +0.2
947,590 + 16694 mRNA_8326 0.73 -0.8
947,593 + 16694 mRNA_8326 0.73 -0.4
947,716 - -0.3
947,735 + +1.3
947,864 + +1.0
947,892 + +1.1
947,898 + +1.3
948,016 - +1.4
948,025 + +0.2
948,031 + +1.9
948,198 + +0.2
948,320 - -1.4
948,339 + +0.9
948,339 + +0.1

Or see this region's nucleotide sequence