Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8327

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16694 and 16695 are separated by 578 nucleotides16695 and 16696 are separated by 186 nucleotides16696 and 16697 are separated by 193 nucleotides mRNA_8326: 16694 - Hypothetical Protein, at 947,048 to 947,790 16694 mRNA_8327: 16695 - K10251 HSD17B12, KAR, IFA38 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase, at 948,369 to 949,936 16695 mRNA_8328: 16696 - Hypothetical Protein, at 950,123 to 950,641 16696 mRNA_8329: 16697 - KOG0527 HMG-box transcription factor, at 950,835 to 951,817 16697

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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947,553 - 16694 mRNA_8326 0.68 -0.9
947,585 - 16694 mRNA_8326 0.72 +0.2
947,588 + 16694 mRNA_8326 0.73 +0.2
947,590 + 16694 mRNA_8326 0.73 -0.8
947,593 + 16694 mRNA_8326 0.73 -0.4
947,716 - -0.3
947,735 + +1.3
947,864 + +1.0
947,892 + +1.1
947,898 + +1.3
948,016 - +1.4
948,025 + +0.2
948,031 + +1.9
948,198 + +0.2
948,320 - -1.4
948,339 + +0.9
948,339 + +0.1
950,388 - 16696 mRNA_8328 0.51 -0.1
950,526 + 16696 mRNA_8328 0.78 -0.2
950,697 - -1.3
950,818 + -0.4
950,827 + +0.3

Or see this region's nucleotide sequence