Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8343

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16710 and 16711 are separated by 842 nucleotides16711 and 16712 are separated by 845 nucleotides mRNA_8342: 16710 - Hypothetical Protein, at 981,863 to 982,243 16710 mRNA_8343: 16711 - Hypothetical Protein, at 983,086 to 983,598 16711 mRNA_8344: 16712 - K20308 TRAPPC11 trafficking protein particle complex subunit 11, at 984,444 to 989,069 16712

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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982,260 - +0.2
982,390 - +2.1
982,640 - +0.4
982,655 - -1.4
982,692 - +1.0
982,693 + +1.0
982,834 + -0.7
982,856 + -0.0
982,986 + +0.4
982,991 + +0.0
983,132 + +1.3
983,134 - +1.6
983,136 + -0.7
983,136 + -0.1
983,162 + 16711 mRNA_8343 0.15 +1.9
983,271 + 16711 mRNA_8343 0.36 +2.6
983,832 - -0.0
983,943 - +2.7
984,261 - +1.4
984,265 - +0.2
984,429 - -0.3
984,450 - +1.9

Or see this region's nucleotide sequence