Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8346

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16713 and 16714 are separated by 195 nucleotides16714 and 16715 are separated by 348 nucleotides16715 and 16716 overlap by 2 nucleotides mRNA_8345: 16713 - K00062 E1.1.1.116 D-arabinose 1-dehydrogenase, at 989,216 to 990,816 16713 mRNA_8346: 16714 - Hypothetical Protein, at 991,012 to 994,561 16714 mRNA_8347: 16715 - Hypothetical Protein, at 994,910 to 995,448 16715 mRNA_8348: 16716 - K05349 bglX beta-glucosidase, at 995,447 to 998,474 16716

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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990,429 + 16713 mRNA_8345 0.76 +2.2
990,552 - 16713 mRNA_8345 0.83 -1.8
990,992 - -0.4
991,003 + +1.4
991,039 + +0.8
991,323 + +0.7
991,420 + 16714 mRNA_8346 0.11 +3.4
991,448 - 16714 mRNA_8346 0.12 -0.1
991,752 - 16714 mRNA_8346 0.21 +1.3
991,917 - 16714 mRNA_8346 0.25 +1.9
992,188 + 16714 mRNA_8346 0.33 +1.0
993,204 + 16714 mRNA_8346 0.62 -0.8
993,205 - 16714 mRNA_8346 0.62 +1.0
993,374 - 16714 mRNA_8346 0.67 +0.4
993,386 - 16714 mRNA_8346 0.67 +0.3
993,624 - 16714 mRNA_8346 0.74 +1.0
993,637 - 16714 mRNA_8346 0.74 -1.3
993,942 - 16714 mRNA_8346 0.83 +2.0
994,065 - 16714 mRNA_8346 0.86 +0.7
994,208 - +0.6
994,246 + +2.5
994,250 + +0.6
994,626 - +0.4
994,652 - +1.8
994,653 - +1.5
994,661 - +0.3
994,662 + +1.8
994,677 + +0.3
994,684 + +0.7
994,808 + +1.7
994,811 - +1.0
994,818 - -0.7
994,823 - +0.6
994,840 - -0.8
994,925 - +3.7
994,929 - +1.8
994,930 - +0.2
994,933 - -1.0
994,936 - +0.0
994,939 + +0.1
994,940 + -1.4
994,948 + -0.4
994,948 - -0.9
994,949 + +2.2
994,961 + +0.6
994,967 + 16715 mRNA_8347 0.11 +0.2
994,972 - 16715 mRNA_8347 0.12 +0.7
994,973 - 16715 mRNA_8347 0.12 -0.2
994,975 - 16715 mRNA_8347 0.12 +0.4
994,978 + 16715 mRNA_8347 0.13 +1.4
995,029 - 16715 mRNA_8347 0.22 +0.5
995,048 + 16715 mRNA_8347 0.26 +2.8
995,071 - 16715 mRNA_8347 0.30 +1.5
995,073 - 16715 mRNA_8347 0.30 +0.1
995,089 + 16715 mRNA_8347 0.33 +0.6
995,090 + 16715 mRNA_8347 0.33 +0.0
995,102 + 16715 mRNA_8347 0.36 +1.2
995,121 + 16715 mRNA_8347 0.39 +1.7
995,136 + 16715 mRNA_8347 0.42 -0.7
995,140 - 16715 mRNA_8347 0.43 +0.7
995,146 - 16715 mRNA_8347 0.44 +1.8
995,147 + 16715 mRNA_8347 0.44 +0.1
995,154 - 16715 mRNA_8347 0.45 -0.0
995,155 + 16715 mRNA_8347 0.45 +0.8
995,161 - 16715 mRNA_8347 0.47 +0.4
995,168 - 16715 mRNA_8347 0.48 +1.1
995,176 + 16715 mRNA_8347 0.49 +0.7
995,179 - 16715 mRNA_8347 0.50 +0.9
995,194 - 16715 mRNA_8347 0.53 +0.3
995,196 + 16715 mRNA_8347 0.53 +3.0
995,207 - 16715 mRNA_8347 0.55 +1.5
995,208 + 16715 mRNA_8347 0.55 +0.0
995,215 + 16715 mRNA_8347 0.57 -1.0
995,221 + 16715 mRNA_8347 0.58 +0.9
995,222 + 16715 mRNA_8347 0.58 -1.0
995,238 - 16715 mRNA_8347 0.61 +1.2
995,267 + 16715 mRNA_8347 0.66 +1.4
995,283 - 16715 mRNA_8347 0.69 -0.8
995,293 + 16715 mRNA_8347 0.71 -0.7
995,301 - 16715 mRNA_8347 0.73 -0.6
995,307 - 16715 mRNA_8347 0.74 +1.5
995,308 - 16715 mRNA_8347 0.74 -0.2
995,310 - 16715 mRNA_8347 0.74 +1.0
995,314 - 16715 mRNA_8347 0.75 +0.5
995,316 - 16715 mRNA_8347 0.75 -0.4
995,329 - 16715 mRNA_8347 0.78 +0.7
995,339 - 16715 mRNA_8347 0.80 +0.9
995,350 - 16715 mRNA_8347 0.82 +1.9
995,352 + 16715 mRNA_8347 0.82 +0.2
995,353 - 16715 mRNA_8347 0.82 +1.4
995,354 + 16715 mRNA_8347 0.82 -0.8
995,370 - 16715 mRNA_8347 0.85 +0.2
995,373 + 16715 mRNA_8347 0.86 -0.0
995,373 - 16715 mRNA_8347 0.86 +1.2
995,376 + 16715 mRNA_8347 0.86 +0.7
995,376 + 16715 mRNA_8347 0.86 +1.0
995,444 - +0.4
995,465 - -1.6
995,487 - +1.3
995,548 + +0.4
995,560 - +0.2

Or see this region's nucleotide sequence