Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8367

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16734 and 16735 are separated by 180 nucleotides16735 and 16736 are separated by 510 nucleotides mRNA_8366: 16734 - BLAST similar to An01g09190 [Aspergillus kawachii IFO 4308], at 1,045,638 to 1,046,770 16734 mRNA_8367: 16735 - Hypothetical Protein, at 1,046,951 to 1,048,222 16735 mRNA_8368: 16736 - K07119 K07119 uncharacterized protein, at 1,048,733 to 1,050,184 16736

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
1,045,977 + 16734 mRNA_8366 0.30 +0.2
1,046,385 + 16734 mRNA_8366 0.66 -0.9
1,046,824 - +0.4
1,046,839 - +0.4
1,046,850 - +1.4
1,046,852 + +0.3
1,046,865 + -1.9
1,046,922 + -0.4
1,046,973 - +0.7
1,047,021 - +1.9
1,047,029 - +0.2
1,047,177 + 16735 mRNA_8367 0.18 +2.0
1,047,197 - 16735 mRNA_8367 0.19 -1.9
1,047,608 + 16735 mRNA_8367 0.52 +0.4
1,047,638 - 16735 mRNA_8367 0.54 -1.8
1,047,732 + 16735 mRNA_8367 0.61 +0.6
1,047,795 + 16735 mRNA_8367 0.66 +1.2
1,047,795 + 16735 mRNA_8367 0.66 -0.2
1,047,931 - 16735 mRNA_8367 0.77 +0.1
1,047,937 + 16735 mRNA_8367 0.78 +0.5
1,047,946 - 16735 mRNA_8367 0.78 -1.7
1,047,949 + 16735 mRNA_8367 0.78 +1.5
1,047,952 - 16735 mRNA_8367 0.79 -0.5
1,048,080 + 16735 mRNA_8367 0.89 -2.6
1,048,082 - 16735 mRNA_8367 0.89 +1.3
1,048,106 - +1.0
1,048,114 - +1.4
1,048,219 + +0.3
1,048,229 - +0.6
1,048,253 + -0.7
1,048,274 + -0.5
1,048,374 + +0.8
1,048,374 + +3.2
1,048,374 + +1.3
1,048,381 + -0.4
1,048,385 + -0.2
1,048,386 + -0.8
1,048,391 - -0.2
1,048,393 + -0.1
1,048,394 - +2.9
1,048,413 + -0.3
1,048,425 + -1.6
1,048,425 - -0.5
1,048,512 - -0.3
1,048,543 + +0.4
1,048,547 + +0.7
1,048,548 - +2.1
1,048,559 - +2.7
1,048,560 + +1.2
1,048,566 - +0.9
1,048,566 - -0.4
1,048,568 - +2.3
1,048,570 + +0.1
1,048,577 + +2.1
1,048,716 + +0.9
1,049,075 - 16736 mRNA_8368 0.24 -1.1
1,049,076 + 16736 mRNA_8368 0.24 -0.1

Or see this region's nucleotide sequence