Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8370

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16737 and 16738 are separated by 423 nucleotides16738 and 16739 are separated by 169 nucleotides mRNA_8369: 16737 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011, at 1,050,307 to 1,054,065 16737 mRNA_8370: 16738 - K12525 metL bifunctional aspartokinase / homoserine dehydrogenase 2, at 1,054,489 to 1,055,817 16738 mRNA_8371: 16739 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 1,055,987 to 1,057,436 16739

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,053,710 + +1.8
1,053,722 + -0.4
1,054,153 - +2.4
1,054,158 - +0.2
1,054,162 + -0.7
1,054,178 - -2.1
1,054,294 + +1.6
1,054,300 + +0.1
1,054,610 - +0.8
1,054,648 - 16738 mRNA_8370 0.12 +0.8
1,055,139 - 16738 mRNA_8370 0.49 +0.1
1,055,205 + 16738 mRNA_8370 0.54 -0.8
1,055,485 + 16738 mRNA_8370 0.75 -0.3
1,056,813 - 16739 mRNA_8371 0.57 +2.6

Or see this region's nucleotide sequence