Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8378

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16745 and 16746 are separated by 941 nucleotides mRNA_8377: 16745 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 1,066,726 to 1,069,498 16745 mRNA_8378: 16746 - KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins, at 1,070,440 to 1,071,948 16746

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,069,505 + +0.3
1,069,887 + -1.4
1,070,004 + -2.7
1,070,043 + +1.1
1,070,179 + +0.6
1,070,190 - +0.1
1,070,193 + +0.7
1,070,203 - +0.5
1,070,223 + +1.3
1,070,333 - -0.5
1,070,346 - -0.4
1,072,262 - -0.7
1,072,270 - +0.3
1,072,403 + -0.6
1,072,403 + -0.5
1,072,410 - -0.1
1,072,411 - +0.7
1,072,414 - +0.4
1,072,415 + +0.3
1,072,537 + +0.1

Or see this region's nucleotide sequence