Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8399

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16767 and 16768 are separated by 304 nucleotides mRNA_8399: 16767 - KOG1721 FOG Zn-finger, at 1,128,707 to 1,128,957 16767 mRNA_8400: 16768 - K12189 VPS25, EAP20 ESCRT-II complex subunit VPS25, at 1,129,262 to 1,130,136 16768

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,127,735 - +1.0
1,127,997 + +0.6
1,128,130 - -0.5
1,128,437 - +0.3
1,128,555 + -0.8
1,128,571 + -1.0
1,128,610 - -0.7
1,128,753 + 16767 mRNA_8399 0.18 +0.7
1,129,069 + +2.0
1,129,467 + 16768 mRNA_8400 0.23 -1.4
1,129,476 + 16768 mRNA_8400 0.24 -0.8
1,129,640 - 16768 mRNA_8400 0.43 -1.3

Or see this region's nucleotide sequence