Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8412

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16779 and 16780 are separated by 77 nucleotides16780 and 16781 are separated by 44 nucleotides mRNA_8411: 16779 - KOG2898 Predicted phosphate acyltransferase, contains PlsC domain, at 1,159,306 to 1,160,640 16779 mRNA_8412: 16780 - KOG2504 Monocarboxylate transporter, at 1,160,718 to 1,162,780 16780 mRNA_8413: 16781 - KOG4484 Uncharacterized conserved protein, at 1,162,825 to 1,164,107 16781

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,159,751 - 16779 mRNA_8411 0.33 +1.4
1,159,824 - 16779 mRNA_8411 0.39 +0.7
1,159,982 + 16779 mRNA_8411 0.51 -0.3
1,160,032 + 16779 mRNA_8411 0.54 +1.2
1,160,072 + 16779 mRNA_8411 0.57 +0.8
1,160,134 - 16779 mRNA_8411 0.62 +0.7
1,160,190 - 16779 mRNA_8411 0.66 +1.7
1,160,194 - 16779 mRNA_8411 0.67 +0.6
1,160,210 + 16779 mRNA_8411 0.68 -0.1
1,160,332 - 16779 mRNA_8411 0.77 +0.6
1,160,365 + 16779 mRNA_8411 0.79 +0.8
1,160,377 + 16779 mRNA_8411 0.80 +1.1
1,160,514 - -0.0
1,160,525 + -0.2
1,160,530 + +0.9
1,160,542 + -0.5
1,160,677 + +0.4
1,160,681 + +1.4
1,160,813 + -0.9
1,160,813 + +0.3
1,160,823 - +0.0
1,160,825 + +0.2
1,160,834 - -1.2
1,160,834 + +2.3
1,160,962 - 16780 mRNA_8412 0.12 -2.2
1,160,996 + 16780 mRNA_8412 0.13 +0.6
1,161,069 - 16780 mRNA_8412 0.17 -1.6
1,161,239 - 16780 mRNA_8412 0.25 -0.1
1,161,264 - 16780 mRNA_8412 0.26 +0.9
1,161,452 + 16780 mRNA_8412 0.36 +1.8
1,161,535 - 16780 mRNA_8412 0.40 +0.6
1,161,575 - 16780 mRNA_8412 0.42 +0.1
1,161,682 + 16780 mRNA_8412 0.47 +1.4
1,161,716 + 16780 mRNA_8412 0.48 +1.2
1,161,821 - 16780 mRNA_8412 0.53 -0.6
1,161,821 - 16780 mRNA_8412 0.53 +0.3
1,161,827 + 16780 mRNA_8412 0.54 +1.6
1,161,827 + 16780 mRNA_8412 0.54 -0.1
1,161,827 + 16780 mRNA_8412 0.54 +0.1
1,161,827 + 16780 mRNA_8412 0.54 +0.7
1,161,858 + 16780 mRNA_8412 0.55 +0.7
1,161,972 - 16780 mRNA_8412 0.61 -0.4
1,162,143 + 16780 mRNA_8412 0.69 -0.6
1,162,281 + 16780 mRNA_8412 0.76 +2.9
1,162,314 - 16780 mRNA_8412 0.77 -1.3
1,162,385 + 16780 mRNA_8412 0.81 +0.6
1,162,385 - 16780 mRNA_8412 0.81 -1.0
1,162,563 - 16780 mRNA_8412 0.89 -0.2
1,162,666 - -0.7
1,162,713 - -1.0
1,162,714 + +0.9
1,162,739 + -0.8
1,162,880 + +0.0
1,162,954 + 16781 mRNA_8413 0.10 +0.3
1,163,723 - 16781 mRNA_8413 0.70 -1.6
1,163,729 + 16781 mRNA_8413 0.70 -2.0

Or see this region's nucleotide sequence