Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8415

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16782 and 16783 are separated by 271 nucleotides16783 and 16784 are separated by 718 nucleotides mRNA_8414: 16782 - Hypothetical Protein, at 1,164,242 to 1,165,926 16782 mRNA_8415: 16783 - Hypothetical Protein, at 1,166,198 to 1,166,736 16783 mRNA_8416: 16784 - BLAST Protein byr4 [Hypsizygus marmoreus], at 1,167,455 to 1,171,070 16784

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,165,440 + 16782 mRNA_8414 0.71 +0.9
1,165,623 - 16782 mRNA_8414 0.82 -0.6
1,165,675 - 16782 mRNA_8414 0.85 -0.1
1,165,965 + +0.5
1,166,672 + 16783 mRNA_8415 0.88 -0.3
1,166,780 - -0.9
1,166,793 - +0.5
1,167,096 + -0.0
1,167,131 + -0.1
1,167,133 - +1.3
1,167,135 - -0.7
1,167,154 - +2.6
1,167,254 - -0.9
1,167,311 + +2.3
1,167,380 - -0.2
1,167,416 + +2.3
1,167,564 - -0.8
1,167,727 - +0.7
1,167,728 - +1.1

Or see this region's nucleotide sequence