Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8432

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16799 and 16800 are separated by 108 nucleotides16800 and 16801 are separated by 433 nucleotides mRNA_8431: 16799 - K15105 SLC25A12_13, AGC solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13, at 1,212,231 to 1,215,205 16799 mRNA_8432: 16800 - Hypothetical Protein, at 1,215,314 to 1,218,685 16800 mRNA_8433: 16801 - SUPERFAMILY--SSF54909, at 1,219,119 to 1,219,808 16801

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,214,403 + 16799 mRNA_8431 0.73 +0.4
1,214,834 - 16799 mRNA_8431 0.87 +2.8
1,214,989 - -3.7
1,215,013 - +1.2
1,215,033 - +0.2
1,215,146 + +0.5
1,215,154 - +1.3
1,215,165 + +0.2
1,215,172 + +1.0
1,215,295 - -0.1
1,215,302 - -1.0
1,215,303 - +0.1
1,215,305 + +1.5
1,215,344 + -1.0
1,215,433 + +2.9
1,215,478 + +1.0
1,215,495 + +1.5
1,215,495 + -0.3
1,215,623 - -0.6
1,215,790 - 16800 mRNA_8432 0.14 +2.6
1,216,077 - 16800 mRNA_8432 0.23 +0.9
1,216,085 - 16800 mRNA_8432 0.23 -1.1
1,216,113 - 16800 mRNA_8432 0.24 -1.2
1,216,177 - 16800 mRNA_8432 0.26 +0.4
1,216,404 - 16800 mRNA_8432 0.32 +0.1
1,216,776 - 16800 mRNA_8432 0.43 +1.0
1,216,838 + 16800 mRNA_8432 0.45 -1.3
1,216,955 - 16800 mRNA_8432 0.49 +0.2
1,216,966 + 16800 mRNA_8432 0.49 +0.1
1,216,979 + 16800 mRNA_8432 0.49 +0.2
1,217,110 - 16800 mRNA_8432 0.53 -2.0
1,217,283 - 16800 mRNA_8432 0.58 +0.1
1,217,417 - 16800 mRNA_8432 0.62 +0.2
1,217,437 + 16800 mRNA_8432 0.63 +1.0
1,217,452 + 16800 mRNA_8432 0.63 +0.4
1,217,547 - 16800 mRNA_8432 0.66 +2.3
1,217,570 + 16800 mRNA_8432 0.67 +1.6
1,217,602 + 16800 mRNA_8432 0.68 +1.3
1,217,604 - 16800 mRNA_8432 0.68 +0.9
1,217,719 + 16800 mRNA_8432 0.71 +0.2
1,217,760 - 16800 mRNA_8432 0.73 +1.9
1,218,020 + 16800 mRNA_8432 0.80 -1.0
1,218,293 + 16800 mRNA_8432 0.88 +0.0
1,218,594 - -0.6
1,218,848 - +0.5
1,218,866 + -0.3
1,218,872 + -1.7
1,218,883 - -1.3
1,218,895 - +2.1
1,218,899 + -0.5
1,218,925 + +0.1
1,219,029 - +0.5
1,219,034 - -0.3
1,219,094 + +1.2
1,219,195 - 16801 mRNA_8433 0.11 -0.5
1,219,328 + 16801 mRNA_8433 0.30 +2.0
1,219,459 + 16801 mRNA_8433 0.49 -1.1
1,219,499 + 16801 mRNA_8433 0.55 +2.1
1,219,590 + 16801 mRNA_8433 0.68 +2.1
1,219,607 + 16801 mRNA_8433 0.71 +0.2
1,219,632 - 16801 mRNA_8433 0.74 +1.2

Or see this region's nucleotide sequence