Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8466

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16834 and 16835 are separated by 257 nucleotides mRNA_8466: 16834 - KOG2112 Lysophospholipase, at 1,302,209 to 1,303,351 16834 mRNA_8467: 16835 - Hypothetical Protein, at 1,303,609 to 1,304,454 16835

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,301,209 - +0.1
1,301,217 + +0.8
1,301,351 + +0.3
1,301,476 - -1.6
1,301,488 + -0.3
1,301,621 - +0.8
1,301,630 + -1.5
1,301,741 + +1.7
1,301,757 - +0.3
1,302,204 + +0.7
1,303,078 - 16834 mRNA_8466 0.76 +0.4
1,303,088 - 16834 mRNA_8466 0.77 +0.6
1,303,204 - 16834 mRNA_8466 0.87 +1.3
1,303,361 + +0.2
1,303,645 + +1.2
1,303,781 - 16835 mRNA_8467 0.20 +0.5
1,303,953 - 16835 mRNA_8467 0.41 +0.1
1,304,109 - 16835 mRNA_8467 0.59 +0.7

Or see this region's nucleotide sequence