Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_37

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8404 and 8405 are separated by 760 nucleotides8405 and 8406 are separated by 409 nucleotides mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86,184 to 90,147 8404 mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90,908 to 93,083 8405 mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93,493 to 94,436 8406

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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90,062 + +1.4
90,107 - -0.5
90,219 - -0.6
90,236 - -0.1
90,348 + +1.9
90,354 - +0.1
90,359 + +1.5
90,360 + +0.4
90,362 + -0.3
90,372 - -1.8
90,378 - +1.4
90,378 - +0.6
90,390 + +0.4
90,391 + +1.2
90,392 + +0.6
90,393 + +0.1
90,393 - +1.5
90,394 + +1.1
90,395 + -0.0
90,395 + +0.0
90,399 - -1.5
90,401 - -0.6
90,401 + +2.5
90,403 - +0.1
90,403 - +0.2
90,408 + +1.0
90,408 - +0.2
90,409 + -2.2
90,409 - +0.6
90,411 + -0.4
90,411 + +0.5
90,413 + +1.5
90,420 - -0.2
90,422 - +0.6
90,423 + -0.1
90,424 + +0.3
90,425 + -0.8
90,425 + +1.2
90,428 - -0.6
90,437 - +0.2
90,439 - +2.5
90,439 - -0.1
90,439 - +0.9
90,440 - +1.2
90,441 - +2.3
90,442 + +0.8
90,443 - +0.9
90,453 + +0.8
90,454 - -1.0
90,455 - -1.7
90,462 + +0.5
90,471 + -0.2
90,472 - -0.1
90,480 - -0.1
90,496 - -0.8
90,498 - -0.8
90,499 + -0.6
90,501 - +3.0
90,502 + +0.4
90,503 - +1.1
90,503 - +2.0
90,516 - -1.1
90,517 + +1.7
90,517 + +1.0
90,528 + -0.1
90,547 + +1.7
90,556 + +0.3
90,565 - +1.1
90,567 - +1.2
90,574 - +1.1
90,575 + +1.1
90,579 - +0.2
90,587 + -0.3
90,589 - +0.3
90,590 + -2.7
90,591 + +0.8
90,594 - +1.9
90,603 + +0.9
90,620 - +0.5
90,621 - -0.2
90,625 - -1.4
90,629 - +0.2
90,630 + -1.6
90,630 + -0.5
90,630 - +0.3
90,633 - +1.5
90,633 + +0.0
90,636 - -0.3
90,639 - -1.2
90,641 - -1.9
90,643 + -1.8
90,648 - -0.8
90,649 - +1.1
90,652 + +0.5
90,652 - +1.2
90,655 - +0.4
90,660 + +0.9
90,660 - -0.1
90,662 - -1.5
90,667 - +1.0
90,667 - +0.5
90,668 + +0.5
90,670 + +1.7
90,673 - +0.5
90,674 + -1.0
90,682 + +0.8
90,686 - +0.3
90,686 - -1.1
90,694 - +1.2
90,696 + -0.2
90,700 - -0.1
90,701 + +0.3
90,707 + -1.5
90,720 - +1.4
90,809 + +1.0
90,811 - -0.1
90,819 - +0.9
90,839 + +0.5
90,840 + +0.2
90,850 + -0.3
90,861 + -0.8
91,102 + +0.7
91,107 - +1.7
91,127 - 8405 mRNA_37 0.10 +1.1
91,128 + 8405 mRNA_37 0.10 +1.3
91,245 + 8405 mRNA_37 0.15 +0.8
91,278 - 8405 mRNA_37 0.17 +1.3
91,283 + 8405 mRNA_37 0.17 +1.5
91,411 - 8405 mRNA_37 0.23 +0.6
91,423 - 8405 mRNA_37 0.24 +0.3
91,436 + 8405 mRNA_37 0.24 +0.1
91,443 - 8405 mRNA_37 0.25 +0.7
91,443 - 8405 mRNA_37 0.25 +0.5
91,477 - 8405 mRNA_37 0.26 +0.5
91,480 - 8405 mRNA_37 0.26 -0.1
91,697 - 8405 mRNA_37 0.36 +1.2
91,700 + 8405 mRNA_37 0.36 +0.0
91,715 - 8405 mRNA_37 0.37 +1.1
91,718 + 8405 mRNA_37 0.37 +0.6
91,726 - 8405 mRNA_37 0.38 +1.8
91,740 + 8405 mRNA_37 0.38 +0.6
91,840 + 8405 mRNA_37 0.43 +0.8
91,840 + 8405 mRNA_37 0.43 +0.5
92,005 - 8405 mRNA_37 0.50 +1.2
92,009 - 8405 mRNA_37 0.51 -0.0
92,130 - 8405 mRNA_37 0.56 +0.8
92,142 + 8405 mRNA_37 0.57 +2.1
92,274 + 8405 mRNA_37 0.63 +0.4
92,277 - 8405 mRNA_37 0.63 +0.8
92,300 - 8405 mRNA_37 0.64 +0.9
92,412 - 8405 mRNA_37 0.69 -0.6
92,688 - 8405 mRNA_37 0.82 +1.6
92,822 + 8405 mRNA_37 0.88 +1.4
92,857 - 8405 mRNA_37 0.90 +0.0
92,974 + -0.4
93,195 - -0.7
93,285 - -2.5
93,293 + +1.0
93,314 - +1.2
93,315 + +1.8
93,318 + +0.3
93,447 - +0.9
93,455 + -1.4
93,461 + +1.6
93,485 + +0.1
93,512 + -0.4
93,614 + 8406 mRNA_38 0.13 +1.2
93,645 - 8406 mRNA_38 0.16 +0.7
93,776 - 8406 mRNA_38 0.30 +1.8
93,813 + 8406 mRNA_38 0.34 -0.7
93,961 + 8406 mRNA_38 0.50 +0.4
93,965 - 8406 mRNA_38 0.50 +0.7
94,027 + 8406 mRNA_38 0.57 -0.5

Or see this region's nucleotide sequence