Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_83

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8450 and 8451 are separated by 48 nucleotides8451 and 8452 are separated by 507 nucleotides mRNA_82: 8450 - KOG0519 Sensory transduction histidine kinase, at 194,842 to 197,479 8450 mRNA_83: 8451 - Hypothetical Protein, at 197,528 to 201,315 8451 mRNA_84: 8452 - K01522 FHIT bis(5'-adenosyl)-triphosphatase, at 201,823 to 202,716 8452

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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196,625 - 8450 mRNA_82 0.68 -0.3
196,798 - 8450 mRNA_82 0.74 -0.1
196,939 - 8450 mRNA_82 0.79 -2.3
196,940 - 8450 mRNA_82 0.80 +0.5
196,940 + 8450 mRNA_82 0.80 -2.0
196,952 - 8450 mRNA_82 0.80 -0.1
196,987 - 8450 mRNA_82 0.81 +1.5
197,665 - -0.6
198,073 + 8451 mRNA_83 0.14 +0.4
198,124 - 8451 mRNA_83 0.16 +0.2
198,350 + 8451 mRNA_83 0.22 +0.7
198,535 + 8451 mRNA_83 0.27 +0.9
198,549 + 8451 mRNA_83 0.27 +2.4
198,730 + 8451 mRNA_83 0.32 +4.4
198,851 + 8451 mRNA_83 0.35 -2.5
199,000 + 8451 mRNA_83 0.39 +0.8
199,141 - 8451 mRNA_83 0.43 -0.0
199,258 - 8451 mRNA_83 0.46 -0.7
199,265 + 8451 mRNA_83 0.46 +1.0
199,642 + 8451 mRNA_83 0.56 -1.8
200,230 - 8451 mRNA_83 0.71 +1.9
200,480 + 8451 mRNA_83 0.78 +0.8
200,612 + 8451 mRNA_83 0.81 -0.9
200,628 - 8451 mRNA_83 0.82 +0.6
200,894 - 8451 mRNA_83 0.89 -0.9
201,076 - -1.1
201,380 - +3.0
201,449 - +1.0
201,487 + +3.1
201,510 - +0.2
201,795 - +0.5
201,796 - +1.0
202,233 + 8452 mRNA_84 0.46 -0.1

Or see this region's nucleotide sequence