Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_98

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8465 and 8466 are separated by 706 nucleotides8466 and 8467 are separated by 934 nucleotides mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229,785 to 233,167 8465 mRNA_98: 8466 - Hypothetical Protein, at 233,874 to 234,659 8466 mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235,594 to 240,654 8467

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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232,980 + -1.9
232,995 - -0.2
233,157 - +0.1
233,237 + +0.8
233,256 - -1.3
233,256 - -1.0
233,263 - +1.0
233,276 + -0.3
233,282 - +3.2
233,290 + +3.7
233,290 + -1.2
233,290 + +0.1
233,298 - -0.5
233,298 + +0.1
233,298 - +0.4
233,301 + +1.2
233,301 - +2.6
233,301 - +0.1
233,302 + -0.8
233,315 + -0.1
233,316 - +0.2
233,316 + +0.3
233,317 - -0.4
233,317 - -1.8
233,319 - +0.4
233,320 - -0.1
233,321 + +1.5
233,321 - +0.6
233,321 - +0.2
233,323 - +1.2
233,323 - +0.2
233,324 + +0.0
233,324 + +0.2
233,325 + -0.0
233,325 - -0.1
233,326 + -0.5
233,329 + +0.7
233,332 + -1.4
233,335 + +1.0
233,336 + +0.4
233,337 + +0.4
233,337 + +0.8
233,350 + +2.7
233,350 + -1.0
233,354 - -0.5
233,359 + +0.5
233,365 - +0.6
233,365 - +0.6
233,365 + +0.5
233,375 - -0.4
233,379 + +0.3
233,383 + +0.2
233,387 - +0.6
233,404 + -0.3
233,404 + +0.5
233,408 - +1.6
233,436 - +0.9
233,436 - +0.8
233,436 - -0.7
233,437 - +0.7
233,441 + +1.0
233,442 - +0.3
233,443 - +1.7
233,444 + +0.2
233,446 - -0.2
233,448 - +1.3
233,450 + -2.2
233,451 + +1.6
233,452 + +2.1
233,459 - -2.0
233,488 - -0.2
233,491 - -1.6
233,507 + +0.6
233,512 - +1.3
233,518 - +0.6
233,520 - +1.6
233,523 + -1.1
233,529 - -1.3
233,539 - +0.2
233,541 + +0.9
233,549 + +1.7
233,551 + -0.8
233,559 - +2.0
233,560 + -0.6
233,568 + +0.9
233,571 - +3.2
233,573 + -1.2
233,613 + -1.0
233,657 - +0.9
233,706 + +0.6
233,726 + -1.6
233,851 - -0.8
233,852 + +2.2
233,859 - -0.1
233,865 + +0.0
234,006 - 8466 mRNA_98 0.17 +1.6
234,139 - 8466 mRNA_98 0.34 +1.3
234,284 - 8466 mRNA_98 0.52 +0.4
234,293 + 8466 mRNA_98 0.53 +0.2
234,459 + 8466 mRNA_98 0.74 +0.7
234,600 + +0.6
234,613 + +0.5
234,733 - +0.3
234,750 + -0.7
234,765 + +1.0
234,773 - +0.7
234,904 - -0.3
234,909 + +2.2
234,911 - +0.1
234,914 + -0.5
234,915 - -0.2
234,919 + +0.4
234,920 + +0.4
234,923 - +3.3
234,926 + +0.5
234,926 + -0.3
234,927 - +0.5
234,932 - -0.8
234,935 + -0.4
234,936 + +1.5
234,940 - +0.4
234,941 + +0.1
234,941 + +1.9
234,942 + +0.9
234,943 + +0.4
234,970 - +0.1
234,984 - -0.6
234,985 + -0.0
234,991 - +3.3
234,999 + +0.3
234,999 + +1.3
235,005 + +0.0
235,007 - +0.3
235,011 - -0.3
235,013 + +2.7
235,016 - +0.9
235,016 - -0.7
235,019 - +0.6
235,019 + -0.5
235,024 + +0.3
235,026 - -2.3
235,040 - +0.8
235,041 + +3.0
235,048 - +0.0
235,057 - -0.0
235,061 - +0.7
235,062 - +1.5
235,072 - +1.7
235,077 + +0.7
235,078 - +0.5
235,080 - +0.2
235,080 - +0.9
235,081 + +0.4
235,081 + -0.9
235,085 - +0.3
235,085 - +3.1
235,089 - -0.2
235,091 + +1.7
235,092 - +0.1
235,096 + +1.4
235,104 + +0.7
235,135 - +3.7
235,141 - -1.0
235,141 - -1.0
235,144 - +0.2
235,146 + +2.5
235,147 + +1.2
235,147 - -0.8
235,148 - -0.8
235,150 - +0.9
235,152 - -0.6
235,152 + +0.5
235,160 + -0.2
235,165 - +0.3
235,183 + -1.7
235,195 - +1.5
235,206 - -0.0
235,211 + +2.1
235,211 + +0.2
235,212 + -0.2
235,259 - +0.0
235,260 - -1.0
235,276 - +3.1
235,277 - +0.6
235,279 - +0.1
235,280 + +0.7
235,280 - +0.9
235,281 + -1.0
235,281 + -0.7
235,290 - +0.6
235,291 - +1.2
235,292 + +1.4
235,293 - -0.8
235,297 - +1.2
235,299 - +0.9
235,301 - +0.3
235,302 + +0.8
235,308 - +2.6
235,308 + -1.5
235,311 - +1.6
235,314 - +1.2
235,470 + -1.0
235,486 - -0.0
235,495 + -1.7
235,616 - -0.1

Or see this region's nucleotide sequence