Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_103

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8470 and 8471 are separated by 121 nucleotides8471 and 8472 are separated by 363 nucleotides mRNA_102: 8470 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 247,531 to 248,783 8470 mRNA_103: 8471 - Hypothetical Protein, at 248,905 to 249,863 8471 mRNA_104: 8472 - Hypothetical Protein, at 250,227 to 251,681 8472

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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247,948 - 8470 mRNA_102 0.33 +0.1
248,083 - 8470 mRNA_102 0.44 +0.5
248,427 - 8470 mRNA_102 0.72 -0.4
248,432 - 8470 mRNA_102 0.72 +1.2
248,579 + 8470 mRNA_102 0.84 +0.9
248,657 + 8470 mRNA_102 0.90 +0.4
248,664 + +2.7
248,677 + -0.7
248,744 + -0.0
248,752 + -0.1
249,020 - 8471 mRNA_103 0.12 -0.3
249,179 - 8471 mRNA_103 0.29 +1.3
249,180 - 8471 mRNA_103 0.29 +3.2
249,257 - 8471 mRNA_103 0.37 -0.7
249,294 + 8471 mRNA_103 0.41 -0.5
249,356 + 8471 mRNA_103 0.47 +0.8
249,626 - 8471 mRNA_103 0.75 -0.7
249,667 + 8471 mRNA_103 0.79 +0.9
249,692 - 8471 mRNA_103 0.82 +2.1
249,740 + 8471 mRNA_103 0.87 -0.2
249,768 + -0.3
249,881 - -1.5
249,884 - -0.6
249,912 - +0.3
249,996 - +0.7
250,000 + +0.9
250,001 + -0.3
250,069 - +2.6
250,081 - +0.2
250,090 - -0.4
250,107 + -0.2
250,210 - -0.6
250,230 + +1.1
250,366 - +0.8
250,384 + 8472 mRNA_104 0.11 -0.2
250,458 - 8472 mRNA_104 0.16 -0.4
250,484 + 8472 mRNA_104 0.18 -0.4
250,652 + 8472 mRNA_104 0.29 +1.9
250,657 - 8472 mRNA_104 0.30 +0.0

Or see this region's nucleotide sequence