Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_183

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8550 and 8551 are separated by 207 nucleotides8551 and 8552 are separated by 126 nucleotides mRNA_182: 8550 - K19828 MTG1 mitochondrial GTPase 1, at 442,975 to 444,845 8550 mRNA_183: 8551 - KOG4463 Uncharacterized conserved protein, at 445,053 to 446,538 8551 mRNA_184: 8552 - KOG1286 Amino acid transporters, at 446,665 to 448,836 8552

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
444,963 - -0.7
444,970 - +1.6
444,986 - -0.5
445,107 + -2.3
445,272 - 8551 mRNA_183 0.15 +2.1
445,273 + 8551 mRNA_183 0.15 -1.1
445,280 + 8551 mRNA_183 0.15 +0.8
445,410 - 8551 mRNA_183 0.24 +0.5
445,419 + 8551 mRNA_183 0.25 +1.3
445,983 + 8551 mRNA_183 0.63 -1.9
445,989 - 8551 mRNA_183 0.63 +0.1
446,748 - +2.1
446,983 + 8552 mRNA_184 0.15 +0.0
447,285 + 8552 mRNA_184 0.29 +0.4
447,332 + 8552 mRNA_184 0.31 +0.6

Or see this region's nucleotide sequence