Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_198

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8565 and 8566 are separated by 285 nucleotides8566 and 8567 are separated by 437 nucleotides mRNA_197: 8565 - K14765 NGDN, LCP5 U3 small nucleolar ribonucleoprotein protein LCP5, at 483,524 to 484,817 8565 mRNA_198: 8566 - K02952 RP-S13, rpsM small subunit ribosomal protein S13, at 485,103 to 485,929 8566 mRNA_199: 8567 - Hypothetical Protein, at 486,367 to 488,620 8567

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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484,864 - -1.4
484,893 + -0.9
485,038 - -0.1
486,175 - +0.8
486,178 - +1.1
486,186 + -0.7
486,191 + +0.1
486,196 + +0.4
486,198 + -0.2
486,218 - +0.5
486,402 - -0.8
486,484 - -1.1
486,640 + 8567 mRNA_199 0.12 +0.2
486,760 + 8567 mRNA_199 0.17 +1.6

Or see this region's nucleotide sequence