Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_207

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8575 and 8576 are separated by 405 nucleotides mRNA_207: 8575 - K01892 HARS, hisS histidyl-tRNA synthetase, at 506,523 to 508,733 8575 mRNA_208: 8576 - K19270 yfbT, yniC sugar-phosphatase, at 509,139 to 510,075 8576

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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505,792 - +0.5
505,816 - +1.8
506,084 - +1.5
506,087 + +0.7
506,118 + +1.6
506,257 - +0.5
506,258 - -0.1
506,259 + +1.1
506,276 - +0.1
506,303 + +0.6
506,400 + +0.1
508,504 - 8575 mRNA_207 0.90 +0.9
509,080 + +0.6
509,088 + -0.1
509,405 - 8576 mRNA_208 0.28 +0.7
509,546 - 8576 mRNA_208 0.43 -0.0

Or see this region's nucleotide sequence