Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_262

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8629 and 8630 are separated by 264 nucleotides8630 and 8631 are separated by 832 nucleotides mRNA_261: 8629 - KOG1745 Histones H3 and H4, at 627,613 to 628,433 8629 mRNA_262: 8630 - HMMPfam-Flavin reductase like domain-PF01613, at 628,698 to 628,997 8630 mRNA_263: 8631 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 629,830 to 634,837 8631

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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627,924 + 8629 mRNA_261 0.38 -0.4
628,067 + 8629 mRNA_261 0.55 +1.2
628,194 - 8629 mRNA_261 0.71 +1.5
628,201 + 8629 mRNA_261 0.72 -0.3
628,357 - +2.0
629,082 - +0.6
629,376 - +2.3
629,376 + +1.8
629,391 + +1.4
629,392 + -0.1
629,530 - +0.4
629,823 - +2.6
629,856 + +1.1
629,940 - -0.1

Or see this region's nucleotide sequence