Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_292

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8659 and 8660 are separated by 162 nucleotides8660 and 8661 are separated by 541 nucleotides mRNA_291: 8659 - K03012 RPB4, POLR2D DNA-directed RNA polymerase II subunit RPB4, at 691,511 to 692,003 8659 mRNA_292: 8660 - HMMPfam-Endoplasmic reticulum-based factor for assembly of V-ATPase-PF11712, at 692,166 to 693,130 8660 mRNA_293: 8661 - Hypothetical Protein, at 693,672 to 694,229 8661

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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691,293 - -0.5
691,297 - +1.5
691,302 - +1.6
691,308 - +0.2
691,313 + -0.1
691,751 + 8659 mRNA_291 0.49 +1.1
692,025 - -0.4
693,165 - +2.1
693,179 + +0.4
693,194 + +1.4
693,220 + +2.4
693,495 - -1.5
693,620 - +0.5
693,752 - 8661 mRNA_293 0.14 +0.1
694,051 - 8661 mRNA_293 0.68 +0.3

Or see this region's nucleotide sequence