Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_320

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8687 and 8688 are separated by 118 nucleotides8688 and 8689 are separated by 57 nucleotides mRNA_319: 8687 - KOG2134 Polynucleotide kinase 3' phosphatase, at 759,335 to 760,537 8687 mRNA_320: 8688 - Hypothetical Protein, at 760,656 to 762,781 8688 mRNA_321: 8689 - KOG4317 Predicted Zn-finger protein, at 762,839 to 764,616 8689

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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759,880 - 8687 mRNA_319 0.45 +0.6
760,182 - 8687 mRNA_319 0.70 -0.0
760,325 - 8687 mRNA_319 0.82 -0.4
760,329 - 8687 mRNA_319 0.83 +3.0
760,350 + 8687 mRNA_319 0.84 +0.4
760,450 + +1.7
760,611 - +0.7
760,639 - -0.1
760,752 - -0.4
760,753 - +2.4
760,753 + +1.1
760,753 - +0.5
760,755 + -0.1
760,756 + -1.5
761,027 - 8688 mRNA_320 0.17 +1.2
761,046 + 8688 mRNA_320 0.18 -1.3
761,680 - 8688 mRNA_320 0.48 +0.5
761,802 - 8688 mRNA_320 0.54 -1.2
761,914 + 8688 mRNA_320 0.59 +1.7
762,182 - 8688 mRNA_320 0.72 -0.6
762,477 - 8688 mRNA_320 0.86 -0.6
762,501 + 8688 mRNA_320 0.87 -0.1
762,645 + +0.4
762,785 - -0.9
762,794 + +0.6

Or see this region's nucleotide sequence