Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_329

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8696 and 8697 are separated by 207 nucleotides8697 and 8698 are separated by 625 nucleotides mRNA_328: 8696 - K02987 RP-S4e, RPS4 small subunit ribosomal protein S4e, at 779,514 to 780,910 8696 mRNA_329: 8697 - Hypothetical Protein, at 781,118 to 782,181 8697 mRNA_330: 8698 - KOG2018 Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis, at 782,807 to 784,581 8698

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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780,972 + +2.6
780,979 + +3.2
780,986 + +0.5
780,998 + +0.3
781,000 + +0.6
781,002 + -0.9
781,015 - +0.9
781,096 - -0.5
781,117 - +0.3
781,157 - +0.2
781,291 + 8697 mRNA_329 0.16 +0.6
781,556 + 8697 mRNA_329 0.41 +0.7
781,859 + 8697 mRNA_329 0.70 -1.4
781,862 - 8697 mRNA_329 0.70 +0.1
781,882 - 8697 mRNA_329 0.72 +0.2
781,889 - 8697 mRNA_329 0.72 +1.6
781,895 + 8697 mRNA_329 0.73 +1.1
782,005 - 8697 mRNA_329 0.83 +0.4
782,169 - +1.6
782,312 + +0.1
782,578 - +1.4
782,644 + -0.8
782,780 + +1.2
782,925 - -1.4

Or see this region's nucleotide sequence