Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_340

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8707 and 8708 are separated by 462 nucleotides8708 and 8709 are separated by 188 nucleotides mRNA_339: 8707 - K01693 hisB imidazoleglycerol-phosphate dehydratase, at 798,617 to 799,510 8707 mRNA_340: 8708 - KOG1271 Methyltransferases, at 799,973 to 801,137 8708 mRNA_341: 8709 - K00860 cysC adenylylsulfate kinase, at 801,326 to 802,147 8709

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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799,536 + -0.5
799,555 - +0.1
799,569 - -0.2
799,575 + +0.9
799,705 - +0.1
799,719 - -1.3
799,861 - +0.5
799,867 - -1.8
800,012 - -0.1
800,012 - +0.8
800,292 + 8708 mRNA_340 0.27 +0.9
800,329 - 8708 mRNA_340 0.31 +1.3
800,348 + 8708 mRNA_340 0.32 +1.4
800,571 + 8708 mRNA_340 0.51 +0.1
800,602 - 8708 mRNA_340 0.54 +0.8
800,888 - 8708 mRNA_340 0.79 +0.0
800,917 + 8708 mRNA_340 0.81 +0.2
801,030 - -1.0
801,032 - -0.2
801,036 + +0.4
801,175 - +1.3
801,180 - -0.2
801,182 + -0.2
801,186 - +1.8
801,202 + +0.3
801,323 + +0.0
801,356 + -0.7
801,379 + +0.3
801,467 - 8709 mRNA_341 0.17 +1.1
801,477 - 8709 mRNA_341 0.18 +0.3
801,478 + 8709 mRNA_341 0.18 +0.2
801,479 + 8709 mRNA_341 0.19 +0.1
801,483 - 8709 mRNA_341 0.19 +2.5
801,631 - 8709 mRNA_341 0.37 +2.9
801,679 - 8709 mRNA_341 0.43 +0.7
801,684 - 8709 mRNA_341 0.44 +0.0
801,788 - 8709 mRNA_341 0.56 +0.4
801,803 + 8709 mRNA_341 0.58 -0.7
801,820 - 8709 mRNA_341 0.60 -0.9
802,107 - +1.3
802,107 - +0.4

Or see this region's nucleotide sequence