Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_343

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8709 and 8710 are separated by 268 nucleotides8710 and 8711 are separated by 59 nucleotides8711 and 8712 are separated by 167 nucleotides mRNA_341: 8709 - K00860 cysC adenylylsulfate kinase, at 801,326 to 802,147 8709 mRNA_342: 8710 - SUPERFAMILY--SSF54285, at 802,416 to 802,761 8710 mRNA_343: 8711 - HMMPfam-Domain of unknown function (DUF4078)-PF13300, at 802,821 to 804,087 8711 mRNA_344: 8712 - K00914 PIK3C3, VPS34 phosphatidylinositol 3-kinase, at 804,255 to 807,496 8712

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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802,107 - +1.3
802,107 - +0.4
802,385 - -0.1
802,387 - -0.0
802,388 + +1.7
802,397 + +0.8
802,398 + +0.4
802,547 - 8710 mRNA_342 0.38 -0.6
802,553 - 8710 mRNA_342 0.40 +3.7
802,555 + 8710 mRNA_342 0.40 -0.3
802,560 + 8710 mRNA_342 0.42 +2.5
802,700 - 8710 mRNA_342 0.82 -1.3
802,704 + 8710 mRNA_342 0.83 -2.0
802,711 - 8710 mRNA_342 0.85 +0.2
802,731 + +0.2
802,803 + +1.4
803,141 + 8711 mRNA_343 0.25 -1.9
803,437 - 8711 mRNA_343 0.49 +0.3
803,752 + 8711 mRNA_343 0.73 -0.3
803,885 - 8711 mRNA_343 0.84 +0.1
804,019 - -1.8
804,049 + +1.8
804,149 - +1.0
804,188 - +1.4
804,192 - -0.1
804,342 + +2.2
804,764 - 8712 mRNA_344 0.16 -0.5

Or see this region's nucleotide sequence