Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_389

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8757 and 8758 are separated by 265 nucleotides mRNA_389: 8757 - HMMPfam-Vacuolar sorting protein 9 (VPS9) domain-PF02204,ProSiteProfiles-VPS9 domain profile.-PS51205,SUPERFAMILY--SSF109993, at 906,859 to 910,715 8757 mRNA_390: 8758 - K00869 E2.7.1.36, MVK, mvaK1 mevalonate kinase, at 910,981 to 912,334 8758

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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905,876 - +2.4
906,751 - +2.1
907,188 + +3.5
907,768 - 8757 mRNA_389 0.24 +1.1
908,071 - 8757 mRNA_389 0.31 +3.4
908,441 + 8757 mRNA_389 0.41 -0.7
908,697 - 8757 mRNA_389 0.48 +0.7
908,949 + 8757 mRNA_389 0.54 -1.8
909,008 - 8757 mRNA_389 0.56 -0.5
909,839 - 8757 mRNA_389 0.77 +0.8
910,303 + 8757 mRNA_389 0.89 -1.1
910,469 - +2.3
910,474 + +0.1
910,924 - +0.6

Or see this region's nucleotide sequence