Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_390

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8757 and 8758 are separated by 265 nucleotides8758 and 8759 are separated by 301 nucleotides mRNA_389: 8757 - HMMPfam-Vacuolar sorting protein 9 (VPS9) domain-PF02204,ProSiteProfiles-VPS9 domain profile.-PS51205,SUPERFAMILY--SSF109993, at 906,859 to 910,715 8757 mRNA_390: 8758 - K00869 E2.7.1.36, MVK, mvaK1 mevalonate kinase, at 910,981 to 912,334 8758 mRNA_391: 8759 - K01760 metC cystathionine beta-lyase, at 912,636 to 914,194 8759

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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910,303 + 8757 mRNA_389 0.89 -1.1
910,469 - +2.3
910,474 + +0.1
910,924 - +0.6

Or see this region's nucleotide sequence