Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_425

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8792 and 8793 are separated by 445 nucleotides8793 and 8794 are separated by 294 nucleotides mRNA_424: 8792 - HMMPfam-Diaphanous GTPase-binding Domain-PF06371,SUPERFAMILY--SSF48371, at 987,368 to 990,699 8792 mRNA_425: 8793 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 991,145 to 992,451 8793 mRNA_426: 8794 - Hypothetical Protein, at 992,746 to 993,344 8794

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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990,163 + 8792 mRNA_424 0.84 +1.6
990,201 + 8792 mRNA_424 0.85 +0.8
990,342 - 8792 mRNA_424 0.89 +1.9
990,635 + -0.2
990,768 - +0.8
991,085 - -1.2
991,134 - +0.9
991,212 - +2.0
991,236 + -0.0
991,475 - 8793 mRNA_425 0.25 -0.5
991,507 + 8793 mRNA_425 0.28 -0.1
992,267 - 8793 mRNA_425 0.86 -1.4
992,391 + +3.0
992,974 - 8794 mRNA_426 0.38 +0.6
993,296 + +1.8
993,298 + -0.5

Or see this region's nucleotide sequence