Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_434

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8801 and 8802 are separated by 508 nucleotides8802 and 8803 are separated by 329 nucleotides mRNA_433: 8801 - K03247 EIF3H translation initiation factor 3 subunit H, at 1,004,332 to 1,006,168 8801 mRNA_434: 8802 - K08738 CYC cytochrome c, at 1,006,677 to 1,007,742 8802 mRNA_435: 8803 - K14845 RAI1, DOM3Z RAT1-interacting protein, at 1,008,072 to 1,010,135 8803

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,006,521 + -0.7
1,007,787 - -0.3
1,007,800 + -2.4
1,007,801 + +0.3
1,007,809 + -0.0
1,007,820 - -1.5
1,007,878 + -0.0
1,007,971 + +1.8
1,008,000 + +1.0
1,008,388 + 8803 mRNA_435 0.15 -1.3

Or see this region's nucleotide sequence