Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_453

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8820 and 8821 are separated by 432 nucleotides8821 and 8822 are separated by 373 nucleotides mRNA_452: 8820 - SUPERFAMILY--SSF52047, at 1,053,191 to 1,054,789 8820 mRNA_453: 8821 - SUPERFAMILY--SSF52047, at 1,055,222 to 1,056,818 8821 mRNA_454: 8822 - Hypothetical Protein, at 1,057,192 to 1,059,678 8822

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,054,347 - 8820 mRNA_452 0.72 +0.3
1,054,365 - 8820 mRNA_452 0.73 -0.6
1,054,475 - 8820 mRNA_452 0.80 +1.2
1,054,486 - 8820 mRNA_452 0.81 -1.7
1,054,487 + 8820 mRNA_452 0.81 +0.3
1,054,536 - 8820 mRNA_452 0.84 +3.0
1,054,621 - 8820 mRNA_452 0.89 +1.2
1,054,636 - -1.5
1,054,705 - -0.8
1,054,708 + +0.3
1,054,720 - -0.3
1,054,728 - -0.3
1,054,730 - +1.1
1,054,796 - -0.2
1,054,800 - +0.0
1,054,805 + -0.1
1,054,808 + +0.1
1,054,823 - +0.8
1,054,824 - -0.8
1,054,843 - +0.2
1,054,851 + +1.0
1,054,867 - +1.1
1,054,907 - +1.1
1,054,935 + -0.1
1,054,971 - +0.8
1,055,211 - +0.3
1,055,561 + 8821 mRNA_453 0.21 +2.7
1,055,577 - 8821 mRNA_453 0.22 +1.2
1,055,779 + 8821 mRNA_453 0.35 +2.1
1,056,525 + 8821 mRNA_453 0.82 +2.9
1,056,543 + 8821 mRNA_453 0.83 +0.4
1,056,571 + 8821 mRNA_453 0.84 -0.3
1,056,791 - +1.3
1,056,804 - +1.6
1,056,812 + +1.5
1,056,819 - -0.9
1,056,914 - +1.1
1,056,958 + -3.2
1,056,973 - +3.0
1,056,976 + +0.3
1,057,122 + +0.5
1,057,123 + +1.5
1,057,286 - +1.6

Or see this region's nucleotide sequence