Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_460

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8827 and 8828 are separated by 262 nucleotides8828 and 8829 are separated by 167 nucleotides mRNA_459: 8827 - K10598 PPIL2, CYC4, CHP60 peptidyl-prolyl cis-trans isomerase-like 2, at 1,068,531 to 1,071,036 8827 mRNA_460: 8828 - K15177 LEO1 RNA polymerase-associated protein LEO1, at 1,071,299 to 1,073,173 8828 mRNA_461: 8829 - Hypothetical Protein, at 1,073,341 to 1,074,099 8829

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,070,359 - 8827 mRNA_459 0.73 +0.6
1,070,657 - 8827 mRNA_459 0.85 +2.4
1,070,762 - 8827 mRNA_459 0.89 +1.0
1,070,799 + +2.0
1,071,079 - +0.7
1,071,089 - +2.5
1,071,251 + +0.9
1,071,263 - +0.3
1,071,402 - -0.7
1,071,655 - 8828 mRNA_460 0.19 +0.2
1,071,659 - 8828 mRNA_460 0.19 -0.9
1,071,667 + 8828 mRNA_460 0.20 +0.4
1,072,860 + 8828 mRNA_460 0.83 -0.7
1,072,975 + 8828 mRNA_460 0.89 -1.9
1,073,572 - 8829 mRNA_461 0.30 +0.2
1,073,702 + 8829 mRNA_461 0.48 +0.2
1,073,881 - 8829 mRNA_461 0.71 -0.5
1,074,131 + +2.3
1,074,134 - +0.3
1,074,145 - -0.1
1,074,146 + +0.7

Or see this region's nucleotide sequence