Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_476

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8843 and 8844 are separated by 519 nucleotides mRNA_475: 8843 - K15153 MED31, SOH1 mediator of RNA polymerase II transcription subunit 31, at 1,103,672 to 1,105,927 8843 mRNA_476: 8844 - K02951 RP-S12e, RPS12 small subunit ribosomal protein S12e, at 1,106,447 to 1,107,237 8844

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,105,447 + 8843 mRNA_475 0.79 +2.4
1,105,572 + 8843 mRNA_475 0.84 +1.2
1,105,616 + 8843 mRNA_475 0.86 +0.6
1,105,945 - +1.4
1,106,026 - -0.3
1,106,071 - +1.4
1,107,568 - +2.1
1,107,671 - -1.0
1,107,718 - +1.6
1,108,152 - +2.5

Or see this region's nucleotide sequence